SWIMS publications in 2013

  1. Andrews KR, Perrin WF, Oremus M, Karczmarski L, Bowen BW, Toonen RJ (2013) The evolving male: spinner dolphin (Stenella longirostris) ecotypes are divergent at Y chromosome but not mtDNA or autosomal markers. Molecular Ecology 22(9): 2408-2423
  2. Baker DM, Rodríguez-Martínez RE, Fogel ML (2013) Tourism’s nitrogen footprint on a Meso-american coral reef. Coral Reefs 32(3): 691-699
  3. ​​Baker DM, Andras JP, Jordán-Garza AG, Fogel ML (2013) Nitrate competition varies with temperature among Symbiodinium clades. International Society for Microbial Ecology Journal 7(6): 1248-1251
  4. Baker DM, Weigt L, Fogel M, Knowlton N (2013) Ancient DNA from coral-hosted Symbiodinium reveal a static mutualism over the last 172 years. PLoS ONE 8(2): e55057. DOI:10.1371/journal.pone.0055057
  5. Bao VWW, Leung KMY, Lui GCS, Lam MHW (2013) Acute and chronic toxicities of Irgarol alone and in combination with copper to the marine copepod Tigriopus japonicus. Chemosphere 90(3): 1140-1148
  6. Brandão SN, Yasuhara M, Irizuki T, Horne DJ (2013) The ostracod genus Trachyleberis (Crustacea; Ostracoda) and its type species. Marine Biodiversity 43(4): 363–405
  7. Cao H, Auguet J-C, Gu J-D (2013) Global ecological pattern of ammonia-oxidizing archaea. PLoS ONE 8(2): e52853. DOI:10.1371/journal.pone.0052853
  8. Chan VBS, Thiyagarajan V, Lu XW, Zhang T, Shih K (2013) Temperature dependent effects of elevated CO2 on shell composition and mechanical properties of Hydroides elegans: insights from a multiple stressor experiment. PLoS ONE 8(11): e78945. DOI:10.1371/journal.pone.0078945
  9. Chen HN, Todd CD, Williams GA, Chan BKK (2013) A new passive plankton trap to quantify the supply of crustacean and molluscan larvae to rocky shores. Journal of Experimental Marine Biology and Ecology 441: 80-89
  10. Cheung WWL, Sadovy de Mitcheson YJ, Braynen MT, Gittens LG (2013) Are the last remaining Nassau grouper Epinephelus striatus fisheries sustainable? Status quo in the Bahamas. Endangered Species Research. 20:27-39
  11. Dineshram R, Thiyagarajan V, Lane AC, Xiao S, Yu Z, Leung PTY (2013) Elevated CO2 alters larval proteome and its phosphorylation status in the commercial oyster, Crassostrea hongkongensis. Marine Biology 160(8): 2189–2205
  12. Fiore CL, Baker DM, Lesser MP (2013) Nitrogen biogeochemistry in the Caribbean sponge Xestospongia muta: A source or sink of dissolved inorganic nitrogen? PLoS ONE 8(8): e72961. DOI:10.1371/journal.pone.0072961
  13. Freeman CJ, Thacker RW, Baker DM, Fogel ML (2013) Quality or quantity: is nutrient transfer driven more by symbiont identity and productivity than by symbiont abundance? International Society for Microbial Ecology Journal 7(6): 1116-1125
  14. Garrard SL, Hunter RC, Frommel AY, Lane AC, Phillips JC, Cooper R, Dineshram R, Cardini U, McCoy SJ, Arnberg M et al. (2013) Biological impacts of ocean acidification: a postgraduate perspective on research priorities. Marine Biology 160(8): 1789-1805
  15. Han P, Gu J-D (2013) More refined diversity of anammox bacteria recovered and distribution in different ecosystems. Applied Microbiology and Biotechnology 97(8): 3653-3663
  16. Han P, Li M, Gu J-D (2013) Biases in community structures of ammonia/ammonium-oxidizing microorganisms caused by insufficient DNA extractions from Baijiang soil revealed by comparative analysis of coastal wetland sediment and rice paddy soil. Applied Microbiology and Biotechnology 97(19): 8741-8756
  17. Han P, Gu J-D (2013) A newly designed degenerate PCR primer based on pmoA gene for detection of nitrite-dependent anaerobic methane oxidation bacteria in diverse ecosystem niches. Applied Microbiology and Biotechnology 97(23): 10155-10162
  18. Han P, Huang Y-T, Lin J-G, Gu J-D (2013) A comparison of two 16S rRNA gene-based PCR primer sets in unraveling anammox bacteria from different environmental samples. Applied Microbiology and Biotechnology 97(24): 10521-10529
  19. Hu H, Ding SP, Katayama Y, Kusumi A, Li SX, de Vries RP, Wang J, Yu XZ, Gu J-D (2013) Occurrence of Aspergillus allahabadii on sandstone at Bayon Temple, Angkor Thom, Cambodia. International Biodeterioration and Biodegradation 76: 112-117
  20. Ip RHL, Li WK, Leung KMY (2013) Seemingly unrelated intervention time series models for effectiveness evaluation of large scale environmental remediation. Marine Pollution Bulletin 74(1): 56-65
  21. Iwatani H, Irizuki T, Yasuhara M (2013) Occurrence of a rare puncioid ostracod, Promanawa konishii (Nohara, 1976), in recent sediments of the East China Sea. Journal of Micropalaeontology 32: 221–223
  22. Kaiser S, Brandão SN, Brix S, Barnes DKA, Bowden DA, Ingels J, Leese F, Schiaparelli S, Arango CP, Badhe R, Bax N, Blazewicz-Paszkowycz M, Brandt A, Brenke N, Catarino A, David B, Ridder C, Dubois P, Ellingsen KE, Glover AG, Griffiths HJ, Gutt J, Halanych KM, Havermans C, Held C, Janussen D, Lörz AN, Pearce DA, Pierrat B, Riehl T, Rose A, Sands CJ, Soler-Membrives A, Schüller M, Strugnell JM, Vanreusel A, Veit-Köhler G, Wilson NG, Yasuhara M (2013) Patterns, processes and vulnerability of Southern Ocean benthos: a decadal leap in knowledge and understanding. Marine Biology 160(9): 2295–2317
  23. Keith M, Atkins S, Johnson A, Karczmarski L (2013) Area utilization patterns of humpback dolphins (Sousa plumbea) in Richards Bay, KwaZulu-Natal, South Africa. Journal of Ethology 31(3): 261-274
  24. Kim RO, Kim BM, Hwang DS, Au DWT, Jung JH, Shim WJ, Leung KMY, Wu RSS, Rhee JS, Lee JS (2013) Evaluation of biomarker potential of cytochrome P450 1A (CYP1A) gene in the marine medaka Oryzias melastigma exposed to water-accommodated fractions (WAFs) of Iranian crude oil. Comparative Biochemistry and Physiology C 157(2): 172-182
  25. Ko GWK, Chan VBS, Dineshram R, Choi DKS, Li AJ, Yu Z, Thiyagarajan V (2013) Larval and post-larval stages of Pacific oyster (Crassostrea gigas) are resistant to elevated CO2. PLoS ONE 8(5): e64147. DOI:10.1371/journal.pone.0064147
  26. Lane AC, Mukherjee J, Chan VBS, Thiyagarajan V (2013) Decreased pH does not alter metamorphosis but compromises juvenile calcification of the tube worm Hydroides elegans. Marine Biology 160: 1983-1993
  27. Lau ET, Yung MM, Karraker NE, Leung KMY (2013) Is an assessment factor of 10 appropriate to account for the variation in chemical toxicity to freshwater ectotherms under different thermal conditions? Environmental Science and Pollution Research 21(1):95-104
  28. Lazareth CE, Bustamante Rosell MG, Duprey N, Pujol N, Cabioch G, Caquineau S, Corrège T, Le Cornec F, Maes C, Madeng-Yogo M, Turcq B (2013) A controversial insight into Southwest Pacific mid-Holocene seasonality: from corals to models. PAGES news 21(2): 66-67
  29. Leung JYS, Cheung SG, Qiu JW, Ang PO, Chiu JMY, Thiyagarajan V, Shin PKS (2013) Effect of parental hypoxic exposure on embryonic development of the offspring of two serpulid polychaetes: implication for transgenerational epigenetic effects. Marine Pollution Bulletin 74(1): 149-155
  30. Leung YS, Shin PKS, Qiu JW, Ang PO, Chiu JMY, Thiyagarajan V, Cheung SG (2013) Physiological and behavioural responses of different life stages of a serpulid polychaete to hypoxia. Marine Ecology Progress Series 477: 135-145
  31. Li M, Gu J-D (2013) Community structure and transcript responses of anammox bacteria, AOA and AOB in mangrove sediment microcosms amended with ammonium and nitrite. Applied Microbiology and Biotechnology 97(22): 9859-9874
  32. Li M, Cao H, Hong Y, Gu J-D (2013) Using the variation of anammox bacteria community structures as a bio-indicator for anthropogenic/terrestrial nitrogen inputs in the Pearl River Delta (PRD). Applied Microbiology and Biotechnology 97(22): 9875-9883
  33. Li M, Hong Y, Cao H, Klotz MG, Gu J-D (2013) Diversity, abundance and distribution of NO-forming nitrite reductase-encoding genes in deep-sea subsurface sediments of the South China Sea (SCS). Geobiology 11(2): 170-179
  34. Li M, Hong Y, Cao H, Gu J-D (2013) Community structures and distribution of anaerobic ammonium oxidizing and nirS-encoding nitrite-reducing bacteria in surface sediments of the South China Sea. Microbial Ecology 66(2): 281-296
  35. Ma KY, Sadovy de Mitcheson Y, Chu HK (2013) Isolation and characteriszation of microsatellite markers from the camouflage grouper, Epinephelus polyphekadion (Epinephelidae). Conservation Genetics Resources 5(4):1129-1132.
  36. Marshall DJ, Ng TPT (2013) Shell standing in littorinid snails: a multifunctional behaviour associated with mating? Journal of Molluscan Studies 79(1):74-75
  37. Mendez M, Jefferson TA, Kolokotronis S-O, Krützen M, Parra GJ, Collins T, Minton G, Baldwin R, Berggren P, Särnblad A, Amir OA, Peddemors VM, Karczmarski L, Guissamulo A, Smith B, Sutaria D, Amato G, Rosenbaum HC (2013) Integrating multiple lines of evidence to better understand the evolutionary divergence of humpback dolphins along their entire distribution range: a new dolphin species in Australian waters? Molecular Ecology 22(23): 5936-5948
  38. Mora C, Wei CL, Rollo A, Amaro T, Baco AR, Billett D, Bopp L, Chen Q, Collier M, Danovaro R, Gooday AJ, Grupe BM, Halloran PR, Ingels J, Jones DOB, Levin LA, Nakano H, Norling K, Ramirez-Llodra E, Rex M, Ruhl HA, Smith CR, Sweetman AK, Thurber AR, Tjiputra JF, Usseglio P, Watling L, Wu T, Yasuhara M (2013) Biotic and human vulnerability to projected changes in ocean biogeochemistry over the 21st century. PLoS Biology 11(10): e1001682. DOI:10.1371/journal.pbio.1001682.
  39. Mukherjee J, Wong KKW, Chandramouli K, Qian PY, Leung PTY, Wu RSS, Thiyagarajan V (2013) Proteomic response of marine invertebrate larvae to acidification and hypoxia during metamorphosis and calcification. Journal of Experimental Biology 216: 4580-4589
  40. Mukherjee J, Po BHK, Chiu JMY, Wu RSS, Qian PY, Thiyagarajan V (2013) Polybrominated diphenyl ethers does not alter metamorphosis but changes proteome of the invasive slipper limpet Crepidula onyx. Marine Pollution Bulletin 73(1): 273-281
  41. Ng TPT, Saltin SH, Davies MS, Johannesson K, Stafford R, Williams GA (2013) Snails and their trails: the multiple functions of trail following in gastropods. Biological Reviews 88 (3): 683-700
  42. Ng TPT (2013) Sexual selection in marine snails using littorinids as model species. The Malacologist 61: 20-22
  43. Ory NC, Dudgeon D, Thiel M (2013) Host-use patterns and factors influencing the choice between anemone and urchin hosts by a caridean shrimp. Journal of Experimental Marine Biology and Ecology 449: 85–92
  44. Redding JE, Myers-Miller RL, Baker DM, Fogel ML, Raymundo LJ, Kim K (2013) Link between sewage-derived nitrogen pollution and coral disease severity. Marine Pollution Bulletin 73(1): 57-63
  45. Rhee JS, Kim BM, Jeong CB, Leung KMY, Park GS, Lee JS (2013) Development of enzyme-linked immunosorbent assay (ELISA) for glutathione S-transferase (GST-S) protein in the intertidal copepod Tigriopus japonicus and its application for environmental monitoring. Chemosphere 93(10): 2458-2466
  46. Rhee JS, Kim BM, Jeong CB, Park HG, Leung KMY, Lee YM, Lee JS (2013) Effect of pharmaceuticals exposure on acetylcholinesterase (AchE) activity and on the expression of AchE gene in the monogonont rotifer, Brachionus koreanus. Comparative Biochemistry and Physiology 158(4): 216-224
  47. Shin PKS, Leung JYS, Qiu JW, Ang PO, Chiu JMY, Thiyagarajan V, Cheung SG (2013) Hypoxia induces abnormal larval development and affects biofilm–larval interaction in the serpulid polychaete Hydroides elegans. Marine Pollution Bulletin 76(1-2): 291–297
  48. Tsang LM, Chan BKK, Williams GA, Chu KH (2013) Who is moving where? Molecular evidence reveals patterns of range shift in the acorn barnacle Hexechamaesipho pilsbryi in Asia. Marine Ecology Progress Series 488: 187-200
  49. Vincent ACJ, Sadovy de Mitcheson YJ, Fowler SL, Lieberman S (2013) The role of CITES in the conservation of marine fishes subject to international trade. Fish and Fisheries. DOI:10.1111/faf.12035 pp1-30.
  50. Wang J, Gu J-D (2013) Dominance of Candidatus scalindua species in anammox community revealed in soils with different duration of rice paddy cultivation in Northeast China. Applied Microbiology and Biotechnology 97(4): 1785-1798
  51. Wang Y, Feng Y-Y, Ma X-J, Gu J-D (2013) Seasonal changes of ammonia/ammonium oxidizing prokaryotes (AOPs) in the oxic and anoxic sediments of mangrove wetland. Applied Microbiology and Biotechnology 97(17): 7919-7934
  52. Wang YF, Gu J-D (2013) Higher diversity of ammonia/ammonium-oxidizing prokaryotes in constructed freshwater wetland than natural coastal marine wetland. Applied Microbiology and Biotechnology 97(15): 7015-7033
  53. Wong SWY, Leung KMY, Djurisic AB (2013) A comprehensive review on the aquatic toxicity of engineered nanomaterials. Reviews in Nanoscience and Nanotechnology 2(2): 79-105
  54. Yan ZG, Wang H, Wang YZ, Zhang YH, Yu RZ, Zhou JL, Leung KMY, Liu ZT (2013) Developing a national water quality criteria system in China. Water Policy 15(6): 936-942
  55. Yasuhara M, Hunt G, Okahashi H, Brandão SN (2013) The ‘Oxycythereis’ problem: taxonomy and palaeobiogeography of deep-sea ostracod genera Pennyella and Rugocythereis. Palaeontology 56(5): 1045–1080
  56. Yeung JWY, Leung KMY (2013) Effects of animal size and nutritional status on the RNA/DNA ratio in different tissues of the green-lipped mussel Perna viridis (Linnaeus, 1758). Journal of the Marine Biological Association of the United Kingdom 93(1): 217-225



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